species:   Scscl
pid:       PID1653
parent:    Ssc-milR-129
paralog:   
locus:     NW_001820827.1:616857-616927
matures:   ['CGCUCGAGGGUCAUUCGGGU', 'UUUGGGAUGCGAUCACGGGCGAA']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820827.1:616857-616927

9 out of bounds
43 alignments
9 proper strand
6 stranded perfect matches

*************************                    ************************  
AAUCCGGCUUUGGGAUGCGAUCACGGGCGAAUCGCUUCAAACGCUCGAGGGUCAUUCGGGUUGGGUUAACU
((((((((((..((((..((((.((((((............))))))..))))))))))))))))))....
-----------------------------------------CGCUCGAGGGUCAUUCGGGU---------- l=20 a=0 c
--------UUUGGGAUGCGAUCACGGGCGAA---------------------------------------- l=23 a=0 c*
-----------------------------------------------AGGGUCAUUCGGGUUGGGUUAA-- l=22 a=2 ma
AAUCCGGCUUUGGGAUGCGAUCACG---------------------------------------------- l=25 a=0 ma*

--------UUUGGGAUGCGAUCACGGGCGAAU--------------------------------------- l=24 a=1 
---------UUGGGAUGCGAUCACGGGCGAAU--------------------------------------- l=23 a=1 
--------------------------------------AAACGCUCGAGGGUCAUUCGGG----------- l=22 a=1 
-----------------------------------------CGCUCGAGGGUCAUUCGGGUa--------- l=21 a=1 
--------------------------------------------UCGAGGGaCAUUCGGGUUGGGU----- l=22 a=1 
---------------------------------------------CGAGGGUCAUUCGGGUUGGGUaA--- l=23 a=1 
-----------------------------------------------AGGGUCAUUCGGGUUGGGUUA--- l=21 a=1 
-----------------------------------------------AGGGUCAUUCGGGUUGGGUUAA-- l=22 a=2 (ma)

mb-01011
ax-1011011
ku-01
ss-111110011100
fn-101
